Applied Bioinformatics Group of the Medical University Innsbruck
The bioinformatic analyses of data generated for users of the Expression Profiling Unit of the Medical University Innsbruck are also performed by our group.
Resources and tools
Resources and tools provides links to various software tools and web resources/applications developed by the group and hosted on our servers. Additionally we mirror the Ensembl database and the Ensembl and VEGA biomart databases.
Affymetrix custom CDF files
Custom CDF files and Bioconductor packages created for new generation Affymetrix sense target (ST) microarrays (Human Exon 1.0 ST v2, Human Gene 1.0 ST v1 and Mouse Gene 1.0 ST v1).
Development of R/Bioconductor software packages
Various R-software packages for data analysis and visualisation. Our maDB and pgUtils packages providing functions to store/retrieve microarray data to a database backend and to create such a database are also part of Bioconductor.
pri-miRNA prediction and Affymetrix probeset identification
Definition of potential primary transcription units of microRNAs (miRNAs) based on their genomic localization and identification of Affymetrix probesets detecting these primary transcription units.
CARMAweb
Web application for the analysis of microarray data. CARMAweb uses R and Bioconductor as calculation backend.
madbWeb
Web interface to the microarray database at the TCRI. The database hosts gene expression datasets generated at the TCRI (Kofler group) and provides various tools to access and analyze this data.
floWeb
Web application for management and analysis of flow cytometry data.
Affymetrix custom CDF files
Custom CDF files and Bioconductor packages created for new generation Affymetrix sense target (ST) microarrays (Human Exon 1.0 ST v2, Human Gene 1.0 ST v1 and Mouse Gene 1.0 ST v1).
Development of R/Bioconductor software packages
Various R-software packages for data analysis and visualisation. Our maDB and pgUtils packages providing functions to store/retrieve microarray data to a database backend and to create such a database are also part of Bioconductor.
pri-miRNA prediction and Affymetrix probeset identification
Definition of potential primary transcription units of microRNAs (miRNAs) based on their genomic localization and identification of Affymetrix probesets detecting these primary transcription units.
CARMAweb
Web application for the analysis of microarray data. CARMAweb uses R and Bioconductor as calculation backend.
madbWeb
Web interface to the microarray database at the TCRI. The database hosts gene expression datasets generated at the TCRI (Kofler group) and provides various tools to access and analyze this data.
floWeb
Web application for management and analysis of flow cytometry data.
Quick links
News
09.01.2012: Updated miRNA host gene predictions.
14.12.2011: Custom Affymetrix CDF for Ensembl 65 available.
18.10.2011: Custom Affymetrix CDF for Ensembl 64 available.
15.10.2011: PhD position available.
13.10.2011: Custom CDF files online.
14.12.2011: Custom Affymetrix CDF for Ensembl 65 available.
18.10.2011: Custom Affymetrix CDF for Ensembl 64 available.
15.10.2011: PhD position available.
13.10.2011: Custom CDF files online.
Contact
Applied Bioinformatics Group,
Division Molecular Pathophysiology,
Biocenter, Medical University Innsbruck
Fritz-Pregel-Str 3/IV, 6020 Innsbruck, Austria
email: johannes.rainer@i-med.ac.at
phone: 0043 512 570485 13
Division Molecular Pathophysiology,
Biocenter, Medical University Innsbruck
Fritz-Pregel-Str 3/IV, 6020 Innsbruck, Austria
email: johannes.rainer@i-med.ac.at
phone: 0043 512 570485 13